Dr. Rajesh Ramaswamy

Profile

Academic positionPost Doc
Research fieldsBioinformatics and Theoretical Biology,Biophysics
KeywordsDevelopmental biology, Hybrid particle-mesh methods, Active polar gels, Mechanochemical coupling, Computational modelling

Current contact address

CountryGermany
CityDresden

Host during sponsorship

Prof. Dr. Frank JülicherMax-Planck-Institut für Physik komplexer Systeme, Dresden
Start of initial sponsorship01/08/2014

Programme(s)

2014Humboldt Research Fellowship Programme for Postdocs

Publications (partial selection)

2016Rajesh Ramaswamy and Frank Ju?licher: Activity induces traveling waves, vortices and spatiotemporal chaos in a model actomyosin layer. In: Nature Scientific Reports, 2016, 20838
2016George C. Bourantas, Bevan L. Cheeseman, Rajesh Ramaswamy, and Ivo F. Sbalzarini: Using DC PSE operator discretization in Eulerian meshless collocation methods improves their robustness in complex geometries. In: Computers & Fluids, 2016, 285
2015Rajesh Ramaswamy, George Bourantas, Frank Ju?licher and Ivo F. Sbalzarini: A hybrid particle-mesh method for incompressible active polar viscous gels. In: Journal of Computational Physics, 2015, 334
2015Rajesh Ramaswamy and Ivo F. Sbalzarini: Particle methods. Online Book, 2015
2015Rajesh Ramaswamy and Ivo F. Sbalzarini: Reaction network simulation. Online Book, 2015
2012Rajesh Ramaswamy, Ne?lido Gonza?lez-Segredo, Ivo F. Sbalzarini and Ramon Grima: Discreteness induced concentration inversion in mesoscopic chemical systems. In: Nature Communications, 2012, 779
2012Christian L. Mu?ller, Rajesh Ramaswamy and Ivo F. Sbalzarini: Global parameter identification for stochastic reaction networks from single trajectories. In: I.I. Goryanin and A.B. Goryachev, Advances in Systems Biology, vol. 736 of Advances in Experimental Medicine and Biology, chapter 28. Springer, 2012. 477-498
2011Rajesh Ramaswamy and Ivo F. Sbalzarini: A partial-propensity formulation of the stochastic simulation algorithm for chemical reaction networks with delays. In: Journal of Chemical Physics, 2011, 014106
2011Rajesh Ramaswamy and Ivo F. Sbalzarini: Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods. In: Journal of Chemical Physics, 2011, 244103
2011Rajesh Ramaswamy and Ivo F. Sbalzarini: Intrinsic noise alters the frequency spectrum of mesoscopic chemical reaction systems. In: Nature Scientific Reports, 2011, 154
2011Rajesh Ramaswamy, Ne?lido Gonza?lez-Segredo and Ivo F. Sbalzarini: Noise-induced modulation of the relaxation kinetics around a non-equilibrium steady state of non-linear chemical reaction networks. In: PLoS ONE, 2011, e16045
2010Rajesh Ramaswamy and Ivo F. Sbalzarini: A partial-propensity variant of the composition-rejection stochastic simulation algorithm for chemical reaction networks. In: Journal of Chemical Physics, 2010, 044102
2010Anton A. Polyansky, Rajesh Ramaswamy, Pavel E. Volynsky, Ivo F. Sbalzarini, Siewert J. Marrink and Roman G. Efremov: Antimicrobial Peptides Induce Growth of Phosphatidylglycerol Domains in a Model Bacterial Membrane. In: Journal of Physical Chemistry Letters, 2010, 3108-3111
2010Rajesh Ramaswamy and Ivo F. Sbalzarini: Fast exact stochastic simulation algorithms using partial propensities. In: Proc. ICNAAM, Numerical Analysis and Applied Mathematics, International Conference, American Institute of Physics, 2010, 1338-1341
2009Rajesh Ramaswamy, Ne?lido Gonza?lez-Segredo and Ivo F. Sbalzarini: A new class of highly efficient exact stochastic simulation algorithm for chemical reaction networks. In: Journal of Chemical Physics, 2009, 244104
2004N. Venkateswaran and R. Rajesh: Partitioned Parallel Processing Approach for Predicting Multi- Million Neuron Interconnectivity in the Brain Involving Soma-Axon-Dendrites-Synapse: A Simulation Model. In: Brain Inspired Cognitive Systems, 2004,
2004N. Venkateswaran, R. Rajesh, R. Rajasimhan, N. Sudharshan and M. Muhilan: Predicting the Morphology of Arbitrary Dendritic Trees through Simulated Annealing. In: Engineering Intelligent Systems (EIS04), Portugal, sponsored by International Computing Sciences Conference (ICSC), 2004,
2003N. Venkateswaran, R. Rajesh, N. Sudarshan, R. Rajasimhan, C. Chandramouli, R. Chidambareswaran, B. Harish, K. Arvind and M. Muhilan: ?NAM For Massive Neuronal Assembly Modeling: Part-I, Processing Elements. In: The Sixth International Conference on Computational Intelligence and Natural Computing, 2003,
2003N. Venkateswaran, R. Chidambareswaran, B. Harish, K. Arvind, C. Chandramouli, R. Rajesh, R. Rajasimhan and N. Sudarshan: ?NAM For Massive Neuronal Assembly Modeling: Part-II, The Array Architecture. In: The Sixth International Conference on Computational Intelligence and Natural Comput- ing, 2003,