| 2025 | MARQUES, ALENILSON S. and SILVA-OLIVEIRA, WALAS and BORDIN, JOSÉ RAFAEL: COVID-19 in Southern Brazil: Public Health Management and Regional Impacts. In: Anais da Academia Brasileira de Ci\^encias, 97, 2025, |
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| 2025 | Puccinelli, Thiago, Ilha, Alexandre V., and Bordin, Jose Rafael: Competing length scales and symmetry frustration govern nonuniversal melting in 2D core-softened colloidal crystals. In: Phys. Rev. E, 2025, -- |
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| 2025 | Bordin, José Rafael and Ferreira de Matos Jauris, Carolina and C\^ortes, Patrick R B and Araújo, Wanderson S and Moreira, Luana S and Pereira dos Santos, Alexsandra and Bitencourt Leão, Mayara and Moraes, Elizane E and Piotrowski, Maurício J and K\"{o}hler, Mateus H: Computational condensed matter science contributions to addressing water emerging contaminant pollution: a comprehensive review. In: Journal of Physics: Condensed Matter, 37, 2025, 113004 |
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| 2025 | Fuentes-Azcatl, Raúl and Bordin, José Rafael and Barbosa, Marcia C.: Dielectric properties of water inside charged nanoslits: A comparison of rigid and flexible three site models. In: Journal of Molecular Liquids, 427, 2025, 127385 |
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| 2025 | Pinheiro, Lucas Avila and Silva-Oliveira, Walas and de Moraes, Elizane E. and Bordin, José Rafael: Exploring the Thermodynamics and Dynamics of CO2 Using Rigid Models. In: Processes, 13, 2025, 148 |
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| 2025 | Krott, Leandro B. and Kray Silva, Davi Felipe and Ríos Roldan, Abraham de Jesús de J. and Manuel Trejos, Victor and Moreno-Razo, Jose Antonio and Bordin, José Rafael: How Soft is Too Soft? Tuning Order and Disorder in Dimeric Core-Soft Colloids with Bond Flexibility. In: Journal of Physics: Condensed Matter, 2025, |
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| 2025 | Pereira dos Santos, Alexsandra and Ferreira de Matos Jauris, Carolina and Bordin, José Rafael: Interfacial Behavior of Janus Nanorods: A Dissipative Particle Dynamics (DPD) Study on Water–Oil Systems and Nanoconfinement. In: Water, 17, 2025, 1128 |
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| 2025 | C\^ortes, Patrick R. B. and Loubet, Nicolás A. and Moreira, Luana S. and Menéndez, Cintia A. and Appignanesi, Gustavo A. and K\"{o}hler, Mateus H. and Bordin, José Rafael: Nanoscale water behavior and its impact on adsorption: A case study with CNTs and diclofenac. In: The Journal of Chemical Physics, 162, 2025, |
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| 2025 | Ilha, Alexandre Vargas and Puccinelli, Thiago and Bordin, José Rafael: Order-Disorder Transitions and Thermal Pathways in Frustrated 2D Colloidal Crystals. In: Brazilian Journal of Physics, 55, 2025, |
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| 2025 | Castro Cardoso da Rosa, Paulo and Silva, Anna Elisa and Cividini Neiva, Eduardo Guilherme and Bordin, José Rafael and Ferreira de Matos Jauris, Carolina: Structure-Dependent Properties of Silver-Decorated 3D-Reduced Graphene Oxide Nanocomposites: Influence of Reagent Addition Sequence and Applications in Electrochemical Sensing. In: ACS Omega, 10, 2025, 16090–16101 |
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| 2024 | Krott, Leandro B. and Puccinelli, Thiago and Bordin, José Rafael: Core-softened colloid under extreme geometrical confinement. In: Soft Matter, 20, 2024, 4681–4691 |
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| 2024 | Bordin, José Rafael and Ilha, Alexandre Vargas and C\^ortes, Patrick Ruam Bredow and da Silva Oliveira, Walas and Pinheiro, Lucas Avila and de Moraes, Elizane E. and Grison, Tulio G. and K\"{o}hler, Mateus H.: Molecular modeling of aquaporins and artificial transmembrane channels: a mini-review and perspective for plants. In: Theoretical and Experimental Plant Physiology, 36, 2024, 619–634 |
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| 2024 | Puccinelli, Thiago and Marques, Murilo Sodré and Bordin, José Rafael: O pacote LAMMPS como uma ferramenta para o ensino de transi\c{c}ão de fases. In: Revista Brasileira de Ensino de Física, 46, 2024, |
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| 2024 | S. Araújo, Wanderson and Caldeira R\^ego, Celso Ricardo and Guedes-Sobrinho, Diego and Cavalheiro Dias, Alexandre and Rodrigues do Couto, Isadora and Bordin, José Rafael and Ferreira de Matos, Carolina and Piotrowski, Maurício Jeomar: Quantum Simulations and Experimental Insights into Glyphosate Adsorption Using Graphene-Based Nanomaterials. In: ACS Applied Materials & Interfaces, 16, 2024, 31500–31512 |
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| 2024 | Moreira-Soares, Maurício and Mossmann, Eduardo and Travasso, Rui D M and Bordin, José Rafael: TrajPy: empowering feature engineering for trajectory analysis across domains. In: Bioinformatics Advances, 4, 2024, |
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| 2023 | Bordin, José Rafael: A DPD model of soft spheres with waterlike anomalies and poly(a)morphism. In: Soft Matter, 19, 2023, 7613–7624 |
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| 2023 | Leão, Mayara B. and Vendrame, Laura F. O. and Fagan, Solange B. and Zanella, Ivana and Jauris, Iuri M. and Bordin, José R. and de Matos, Carolina F.: Combining multi-scale simulations and experiments to unveil the adsorption of methylene blue in graphene tridimensional-based materials. In: Molecular Systems Design & Engineering, 8, 2023, 666–680 |
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| 2023 | Silva-Oliveira, W. and de Moraes, Elizane E. and Nogueira, T.P.O. and Sales, Dinalva A. and Bordin, José Rafael: Evidence of caged to normal diffusion transition in benzene along supercritical isobars: Insights from molecular dynamics simulations. In: The Journal of Supercritical Fluids, 203, 2023, 106094 |
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| 2023 | Krott, Leandro B. and Bordin, José Rafael: How Dimensionality Affects the Structural Anomaly in a Core-Softened Colloid. In: Colloids and Interfaces, 7, 2023, 33 |
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| 2023 | Bordin, José Rafael and Krott, Leandro B.: Solid-amorphous transition is related to the waterlike anomalies in a fluid without liquid–liquid phase transition. In: The Journal of Chemical Physics, 158, 2023, |
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| 2023 | Leão, Mayara Bitencourt and Bordin, José Rafael and de Matos, Carolina Ferreira: Specific Surface Area Versus Adsorptive Capacity: an Application View of 3D Graphene-Based Materials for the Removal of Emerging Water Pollutants. In: Water, Air, & Soil Pollution, 234, 2023, |
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| 2023 | Nogueira, T.P.O. and Bordin, José Rafael: Stripes polymorphism and water-like anomaly in hard core-soft corona dumbbells. In: Journal of Molecular Liquids, 390, 2023, 123127 |
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| 2023 | Melo, Soraia and Guerrero, Pilar and Moreira Soares, Maurício and Bordin, José Rafael and Carneiro, Fátima and Carneiro, Patrícia and Dias, Maria Beatriz and Carvalho, João and Figueiredo, Joana and Seruca, Raquel and Travasso, Rui D. M.: The ECM and tissue architecture are major determinants of early invasion mediated by E-cadherin dysfunction. In: Communications Biology, 6, 2023, |
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| 2022 | Cardoso, Daniel Souza and Bordin, José Rafael: Classical-relativistic variability of inertia of photon displacement mass in the matter and the specific vacuum temperature. In: Optik, 260, 2022, 169081 |
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| 2022 | Nogueira, T.P.O. and Bordin, José Rafael: Patterns in 2D core-softened systems: From sphere to dumbbell colloids. In: Physica A: Statistical Mechanics and its Applications, 605, 2022, 128048 |
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| 2022 | Hernandes, V F and Marques, M S and Bordin, José Rafael: Phase classification using neural networks: application to supercooled, polymorphic core-softened mixtures. In: Journal of Physics: Condensed Matter, 34, 2022, 024002 |
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| 2022 | Cardoso, Daniel Souza and Bordin, José Rafael: Relativistic dilation and contraction of the probabilities of quantum states of light at angular incidence. In: Optik, 267, 2022, 169712 |
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| 2021 | Marques, Murilo S. and Hernandes, Vinicius F. and Bordin, José Rafael: Core-softened water–alcohol mixtures: the solute-size effects. In: Physical Chemistry Chemical Physics, 23, 2021, 16213–16223 |
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| 2021 | Marques, Murilo Sodré and Bordin, José Rafael: Interplay between adsorption, aggregation and diffusion in confined core-softened colloids. In: JCIS Open, 4, 2021, 100029 |
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| 2021 | Cardoso, Daniel Souza and Hernandes, Vinicius Fonseca and Nogueira, T.P.O. and Bordin, José Rafael: Structural behavior of a two length scale core-softened fluid in two dimensions. In: Physica A: Statistical Mechanics and its Applications, 566, 2021, 125628 |
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| 2021 | Corti, Horacio R. and Appignanesi, Gustavo A. and Barbosa, Marcia C. and Bordin, J. Rafael and Calero, Carles and Camisasca, Gaia and Elola, M. Dolores and Franzese, Giancarlo and Gallo, Paola and Hassanali, Ali and Huang, Kai and Laria, Daniel and Menéndez, Cintia A. and de Oca, Joan M. Montes and Longinotti, M. Paula and Rodriguez, Javier and Rovere, Mauro and Scherlis, Damián and Szleifer, Igal: Structure and dynamics of nanoconfined water and aqueous solutions. In: The European Physical Journal E, 44, 2021, |
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| 2020 | Moreira, Mario L. and Bordin, José Rafael and Andrés, Juan and Varela, José A. and Longo, Elson: A description of the formation and growth processes of CaTiO3mesocrystals: a joint experimental and theoretical approach. In: Molecular Systems Design & Engineering, 5, 2020, 1255–1266 |
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| 2020 | Moreira-Soares, Maurício and Cunha, Susana P and Bordin, José Rafael and Travasso, Rui D M: Adhesion modulates cell morphology and migration within dense fibrous networks. In: Journal of Physics: Condensed Matter, 32, 2020, 314001 |
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| 2020 | Marques, Murilo Sodré and Hernandes, Vinicius Fonseca and Lomba, Enrique and Bordin, José Rafael: Competing interactions near the liquid-liquid phase transition of core-softened water/methanol mixtures. In: Journal of Molecular Liquids, 320, 2020, 114420 |
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| 2020 | Abal, João P. K. and Bordin, José Rafael and Barbosa, Marcia C.: Salt parameterization can drastically affect the results from classical atomistic simulations of water desalination by MoS2 nanopores. In: Physical Chemistry Chemical Physics, 22, 2020, 11053–11061 |
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| 2020 | Nogueira, T. P. O. and Frota, H. O. and Piazza, Francesco and Bordin, José Rafael: Tracer diffusion in crowded solutions of sticky polymers. In: Physical Review E, 102, 2020, |
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| 2020 | S. Marques, Murilo and P. O. Nogueira, Thiago and F. Dillenburg, Rodrigo and C. Barbosa, Marcia and Bordin, José Rafael: Waterlike anomalies in hard core–soft shell nanoparticles using an effective potential approach: Pinned vs adsorbed polymers. In: Journal of Applied Physics, 127, 2020, |
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| 2019 | Borges, Amanda Caroline and K\"{o}hler, Mateus H. and Bordin, José Rafael: CO2 and SO2 Pressure-Driven Adsorption by 3D Graphene Nanoslits: A Molecular Dynamics Study. In: Journal of Nanomaterials, 2019, 2019, 1–7 |
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| 2019 | Rafael Bordin, José: Distinct self-assembly aggregation patters of nanorods with decorated ends: A simple model study. In: Fluid Phase Equilibria, 499, 2019, 112251 |
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| 2019 | K\"{o}hler, Mateus H. and Bordin, José R. and Barbosa, Marcia C.: Ion flocculation in water: From bulk to nanoporous membrane desalination. In: Journal of Molecular Liquids, 277, 2019, 516–521 |
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| 2019 | K\"{o}hler, Mateus H. and Bordin, José R. and de Matos, Carolina F. and Barbosa, Marcia C.: Water in nanotubes: The surface effect. In: Chemical Engineering Science, 203, 2019, 54–67 |
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| 2018 | K\"{o}hler, Mateus Henrique and Bordin, José Rafael and Barbosa, Marcia C.: 2D nanoporous membrane for cation removal from water: Effects of ionic valence, membrane hydrophobicity, and pore size. In: The Journal of Chemical Physics, 148, 2018, |
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| 2018 | Bordin, José Rafael: Distinct aggregation patterns and fluid porous phase in a 2D model for colloids with competitive interactions. In: Physica A: Statistical Mechanics and its Applications, 495, 2018, 215–224 |
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| 2018 | K\"{o}hler, Mateus Henrique and Bordin, José Rafael and da Silva, Leandro B. and Barbosa, Marcia C.: Structure and dynamics of water inside hydrophobic and hydrophilic nanotubes. In: Physica A: Statistical Mechanics and its Applications, 490, 2018, 331–337 |
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| 2018 | K\"{o}hler, Mateus Henrique and Bordin, José Rafael: Surface, Density, and Temperature Effects on the Water Diffusion and Structure Inside Narrow Nanotubes. In: The Journal of Physical Chemistry C, 122, 2018, 6684–6690 |
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| 2018 | Bordin, José Rafael and Barbosa, Marcia C.: Waterlike anomalies in a two-dimensional core-softened potential. In: Physical Review E, 97, 2018, |
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| 2017 | K\"{o}hler, Mateus Henrique and Bordin, José Rafael and da Silva, Leandro B. and Barbosa, Marcia C.: Breakdown of the Stokes–Einstein water transport through narrow hydrophobic nanotubes. In: Physical Chemistry Chemical Physics, 19, 2017, 12921–12927 |
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| 2017 | Bordin, José Rafael and Barbosa, Marcia C.: Flow and structure of fluids in functionalized nanopores. In: Physica A: Statistical Mechanics and its Applications, 467, 2017, 137–147 |
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| 2017 | Bordin, José Rafael and Krott, Leandro B.: How Competitive Interactions Affect the Self-Assembly of Confined Janus Dumbbells. In: The Journal of Physical Chemistry B, 121, 2017, 4308–4317 |
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| 2016 | Krott, Leandro B. and Gavazzoni, Cristina and Bordin, José Rafael: Anomalous diffusion and diffusion anomaly in confined Janus dumbbells. In: The Journal of Chemical Physics, 145, 2016, |
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| 2016 | Bordin, José Rafael and Krott, Leandro B.: Confinement effects on the properties of Janus dimers. In: Physical Chemistry Chemical Physics, 18, 2016, 28740–28746 |
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| 2016 | Bordin, José Rafael and Podgornik, Rudolf and Holm, Christian: Static polarizability effects on counterion distributions near charged dielectric surfaces: A coarse-grained Molecular Dynamics study employing the Drude model. In: The European Physical Journal Special Topics, 225, 2016, 1693–1705 |
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| 2016 | Bordin, José Rafael: Waterlike features, liquid–crystal phase and self-assembly in Janus dumbbells. In: Physica A: Statistical Mechanics and its Applications, 459, 2016, 1–8 |
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| 2015 | Krott, Leandro B. and Bordin, José Rafael and Barraz, Ney M. and Barbosa, Marcia C.: Effects of confinement on anomalies and phase transitions of core-softened fluids. In: The Journal of Chemical Physics, 142, 2015, |
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| 2015 | Krott, Leandro B. and Bordin, José Rafael and Barbosa, Marcia C.: New Structural Anomaly Induced by Nanoconfinement. In: The Journal of Physical Chemistry B, 119, 2015, 291–300 |
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| 2015 | Bordin, José Rafael and Krott, Leandro B. and Barbosa, Marcia C.: Self-Assembly and Water-like Anomalies in Janus Nanoparticles. In: Langmuir, 31, 2015, 8577–8582 |
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| 2014 | Bordin, José Rafael and Andrade, José S. and Diehl, Alexandre and Barbosa, Marcia C.: Enhanced flow of core-softened fluids through narrow nanotubes. In: The Journal of Chemical Physics, 140, 2014, |
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| 2014 | Bordin, José Rafael and Krott, Leandro B. and Barbosa, Marcia C.: High pressure induced phase transition and superdiffusion in anomalous fluid confined in flexible nanopores. In: The Journal of Chemical Physics, 141, 2014, |
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| 2014 | Bordin, José Rafael and Krott, Leandro B. and Barbosa, Marcia C.: Surface Phase Transition in Anomalous Fluid in Nanoconfinement. In: The Journal of Physical Chemistry C, 118, 2014, 9497–9506 |
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| 2013 | Krott, Leandro B. and Bordin, José Rafael: Distinct dynamical and structural properties of a core-softened fluid when confined between fluctuating and fixed walls. In: The Journal of Chemical Physics, 139, 2013, |
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| 2013 | Bordin, José Rafael and Diehl, Alexandre and Barbosa, Marcia C.: Relation Between Flow Enhancement Factor and Structure for Core-Softened Fluids Inside Nanotubes. In: The Journal of Physical Chemistry B, 117, 2013, 7047–7056 |
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| 2012 | Bordin, J. R. and de Oliveira, A. B. and Diehl, A. and Barbosa, Marcia C.: Diffusion enhancement in core-softened fluid confined in nanotubes. In: The Journal of Chemical Physics, 137, 2012, |
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| 2012 | Bordin, J. R. and Diehl, A. and Barbosa, M. C. and Levin, Y.: Ion fluxes through nanopores and transmembrane channels. In: Physical Review E, 85, 2012, |
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