| 2010 | S. Jaensch, M. Decker, A.A. Hyman, and E.W. Myers: Automated Tracking and Analysis of Centrosomes in Early Caenorhabditis elegans Embryos. In: Conf. on Intelligent Systems for Molecular Biology, 2010, 113-120 |
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| 2010 | J. Zie, T. Zhao, H. Peng, and E.W. Myers: Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching. In: MICCAI, 2010, 472-479 |
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| 2010 | E. Giladi, J. Healy, G. Myers, C. Hart, P. Kapranov, D. Lipson, S. Roels, E. Thayer, S. Letovsky: Error Tolerant Indexing and Alignment of Short Reads with Covering Template Families. In: J. of Computational Biology, 2010, 1279-1293 |
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| 2010 | H. Peng, F. Long, T. Zhao, and E. Myers: Proof-Editing is the Bottleneck For 3D Neuron Reconstruction: The Problem and Solutions. In: Neuroinformatics
, 2010, 1-3 |
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| 2010 | S.C. Lam, Z. Ruan, T. Zhao, F. Long, A. Jenett, J. Simpson, E.W. Myers, and H. Peng: Segmentation of Center Brains and Optic Lobes in 3D Confocal Images of Adult Fruit Fly Brains. In: Methods, 2010, 63-69 |
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| 2010 | H. Peng, Z. Ruan, F. Long, J.H. Simpson, and E.W. Myers: V3D Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets. In: Nature Biotechnology, published on-line, 2010, |
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| 2009 | F. Long, H. Peng, X. Liu, S.K. Kim, and E. Myers: A 3D Digital Atlas of C. elegans and its application to single-cell analysis. In: Nature Methods, 2009, 667-672 |
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| 2009 | X. Liu, F. Long, H. Peng, S.J. Aerni, M. Jiang, A. Sanchez-Blanco, J.I. Murray, E. Preston, B. Mericle, S. Batzoglu, E.W. Myers, and S.K. Kim: Analysis of gene regulation and cell fate from single-cell gene expression profiles in C. elegans. In: Cell
, 2009, 623-633 |
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| 2009 | H. Peng, F. Long, and E. Myers: VANO: A Volume-Object Image Annotation System. In: Bioinformatics, 2009, 695-697 |
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| 2008 | F. Long, H. Peng, X. Liu, S. Kim, and E. Myers: Automatic recognition of cells (ARC) for 3D images of C. elegans. In: Proc. 2008 Conf. on Computational Molecular Biology Also published as Springer-Verlag LNCS #4955.
, 2008, 128-139 |
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| 2007 | H. Peng, F. Long J. Zhou, G. Leung, M. Eisen and E.W. Myers: Automatic Image Analysis for Gene Expression Patterns of Fly Embryos. In: BMC Bioinformatics, 2007, S7 |
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| 2007 | F. Long, H. Peng, and E. Myers: Automatic Segmentation of Nuclei in 3D Microscopy Images of C. Elegans. In: Proc. IEEE Symp. on Biomedical Imaging, 2007, 536-539 |
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| 2007 | P. Medvedev, K. Georgiou, G. Myers, and M. Brudno: Computability Models of Sequence Assembly. In: Proc. Workshop on Algorithms in BioInformatics, 2007, 289-301 |
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| 2007 | C.D. Smith, R.C. Edgar, M.D. Yandell, D.R. Smith, S.E. Celniker, E.W. Myers, G.H. Karpen: Improved Repeat Identification and Masking in Dipterans. In: Gene, 2007, 1-9 |
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| 2007 | D.J. Begun, A.K. Holloway, K. Stevenes, L.W. Hillier, Y.P. Poh, M.W. Hahn, P.M. Nista, C.D. Jones, A.D. Kern, C.N. Dewey, L.Pachter, E. Myers, and C.H. Langley: Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans. In: PLoS Biology, 2007, 2534-2559 |
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| 2007 | H. Peng, F. Long, X. Liu, S. Kim, and E. Myers: Straightening Worm Images. In: Bioinformatics, 2007, 234-242 |
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| 2007 | M.M. Mwangi, S.W. Wu, Z. Yanjiao, K. Sieradzki, H. de Lencastre, P. Richardson, D. Bruce, E. Rubin, E. Myers, E.D. Siggia, and A. Tomasz: Tracking in vivo Evolution of Multidrug Resistance in S. aureus by Whole Genome Sequencing. In: PNAS, 2007, 9451-9456 |
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| 2006 | K. Rasmussen, J. Stoye, and E.W. Myers: Efficient q-Gram Filters for Finding All e-matches Over a Given Length. In: J. of Computational Biology, 2006, 296-308 |
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| 2006 | T. Lin, E.W. Myers, and E.P. Xing: Interpreting Anonymous DNA Samples From Mass Disasters -- Probabilistic Forensic Inference Using Genetic Markers. In: Bioinformatics, 2006, 298-306 |
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| 2005 | R. Sharan and E. Myers: A Motif-based Framework for Recognizing Sequence Families. In: Bioinformatics, 2005, 387-393 |
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| 2005 | H. Peng, F. Long, M. Eisen and E.W. Myers: Clustering Gene Expression Patterns of Fly Embryos. In: Proc. IEEE Symp. On Biomedical Imaging
, 2005, 1144-1147 |
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| 2005 | M. Margulies, M. Egholm, W.E. Altman, ... (57 co-authors) E.W. Myers ..., R.F. Begley, J.M. Rothberg: Genome Sequencing in Microfabricated Reactors. In: Nature, 2005, 376-380 |
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| 2005 | R. Edgar and E. Myers: PILER: identification and classification of genomic repeats. In: Bioinformatics, 2005, 52-58 |
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| 2005 | Eugene W. Myers: The Fragment Assembly String Graph. In: Bioinformatics, 2005, 79-85 |
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| 2004 | H. Peng and E.W. Myers: Hybrid-GMM-Matching: Toward Comparing Embryogenesis Staining Pattern Images of D. melanogaster and Finding Co-Regulated Genes. In: 8th Conf. on Computational Molecular Biology, 2004, 157-166 |
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