| 2026 | Ibrahim Abousoliman and Hamdy Abdel-Shafy and Henry Reyer and Rasha M. Ahmed and Maysoon M. Makhlouf and Adel Aboulnaga and Klaus Wimmers and Ahmed M. Sallam: Genome-wide association analysis identifies potential candidate genes for udder conformation traits in Egyptian goats. In: Small Ruminant Research, 261, 2026, 107791 |
|---|
| 2026 | Shi, Zhihai and Wang, Yazhou and Deng, Tingxian and Shokrollahi, Borhan and Wang, Wenqi and Wang, Wenjia and Abdel-Shafy, Hamdy: Transcriptome and m6A epitranscriptome profiling reveal CCL20 as a key mediator of inflammation in Staphylococcus aureus-induced bovine mastitis. In: BMC microbiology, 2026, |
|---|
| 2025 | Qing Liu and Zhenghui Ni and Bo Yu and Hamdy Abdel-Shafy and Lei Cheng and Hongbo Chen: Comparative genomic and transcriptome analyses of transposable elements in buffalo identify key short interspersed element–derived genes for testicular and muscle development. In: Journal of Dairy Science, 108, 2025, 10325-10337 |
|---|
| 2025 | Sihag, Sonia and Zahran, Mohamed and Abdel-Shafy, Hamdy and Chhokar, Vinod and Kumar, Anil and Abou-Bakr, samy and Hassanane, Mohamed and E. Rushdi, Hossam: Genetic Diversity of GPAM, DGAT1, and SCD1 Lipogenic Candidate Genes In Egyptian and Indian Buffalo. In: Egyptian Journal of Veterinary Sciences, 56, 2025, 2895-2908 |
|---|
| 2025 | Aboul-Naga, AM and Abdel-Shafy, Hamdy and Mohamed, SA and Ahmed, RM: Genetic insights and prospects of Egyptian- Nubian (Zaraibi) goats. In: Tropical Animal Health and Production, 57, 2025, 210 |
|---|
| 2025 | Aboul-Naga, A. M. and Abdel-Shafy, H. and Melak, S. and Gamal, L. and Mustafa, S. H. and Abousoliman, I.: Genomic characteristics of performance traits and adaptation to heat stress
in desert Barki sheep. In: Archives Animal Breeding, 68, 2025, 681--690 |
|---|
| 2025 | T.X. Deng and X.Y. Ma and A.Q. Duan and X.R. Lu and H. Abdel-Shafy: Genomic insights into selection signatures and candidate genes for milk production traits in buffalo population. In: animal, 19, 2025, 101427 |
|---|
| 2025 | Shi, Zhihai and Wang, Wenjia and Shokrollahi, Borhan and Wang, Wenqi and Abdel-Shafy, Hamdy and Deng, Tingxian: Role of Quercetin in modulating inflammation and epigenetic regulation of Staphylococcus aureus-Induced bovine mastitis. In: Journal of Agricultural and Food Chemistry, 73, 2025, 8784--8797 |
|---|
| 2025 | Haimiao Lv and Xiaoling Xu and Zihui Wu and Yuxin Lin and Yan Liu and Miaoyu Liu and Linghua Xu and Xiaojie Wang and Nan Sun and Hamdy Abdel-Shafy and Mohamed Abdelrahman and Aiman A. Alsaegh and Ahmed Ezzat Ahmed and Liguo Yang and Guohua Hua: Yes-associated protein 1 is essential for maintaining lactation via regulating mammary epithelial cell dynamics and secretion capacity. In: International Journal of Biological Macromolecules, 293, 2025, 139290 |
|---|
| 2024 | Ting-xian Deng and Xiao-ya Ma and Anqin Duan and Xing-rong Lu and Hamdy Abdel-Shafy: Genome-wide copy number variant analysis reveals candidate genes associated with milk production traits in water buffalo (Bubalus bubalis). In: Journal of Dairy Science, 107, 2024, 7022-7037 |
|---|
| 2024 | Tingxian Deng and Xiaoya Ma and Anqin Duan and Xingrong Lu and Hamdy Abdel-Shafy: Multi-omics analysis provides insight into the genetic basis of proline-derived milk microbiota in buffalo. In: Food Bioscience, 59, 2024, 103942 |
|---|
| 2024 | Wei, Kelong and Lu, Ying and Ma, Xiaoya and Duan, Anqian and Lu, Xingrong and Abdel-Shafy, Hamdy and Deng, Tingxian: Transcriptome-Wide Association Study Reveals Potentially Candidate Genes Responsible for Milk Production Traits in Buffalo. In: International Journal of Molecular Sciences, 25, 2024, |
|---|
| 2023 | EL Nagar, Ayman G. and Salem, Mohamed M. I. and Amin, Amin M. S. and Khalil, Maher H. and Ashour, Ayman F. and Hegazy, Mohammed M. and Abdel-Shafy, Hamdy: A Single-Step Genome-Wide Association Study for Semen Traits of Egyptian Buffalo Bulls. In: Animals, 13, 2023, |
|---|
| 2023 | Deng, Tingxian and Wu, Jiyun and Abdel-Shafy, Hamdy and Wang, Xiaojie and Lv, Haimiao and Shaukat, Aftab and Zhou, Xiang and Zhou, Yang and Sun, Hui and Wei, Pengfei and others: Comparative genomic analysis of the Thiolase family and functional characterization of the acetyl-coenzyme a Acyltransferase-1 gene for Milk biosynthesis and production of Buffalo and cattle. In: Journal of Agricultural and Food Chemistry, 71, 2023, 3325--3337 |
|---|
| 2023 | Sihag, Sonia and Rushdi, Hossam E and Kumar, Anil and Jangra, Alka and Hassanane, Mohamed S and Hamdy, Abdel-Shafy and Chhokar, Vinod: Polymorphic variants analysis in Peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PPARGC1A) Gene of Indian and Egyptian buffaloes. In: Indian Journal of Animal Research, 1, 2023, 6 |
|---|
| 2022 | Abdel-Shafy, Hamdy and Deng, Tingxian and Zhou, Yang and Low, Wai Yee and Hua, Guohua Editorial: Buffalo Genetics and Genomics. In: Frontiers in Genetics, Volume 12 - 2021, 2022, |
|---|
| 2022 | Almarzook, S and Abdel-Shafy, H and Ahmed, AS and Resissmann, M and Brockmann, GA: Genetic diversity of Arabian horses using microsatellite markers. In: Egyptian Journal of Animal Production, 59, 2022, 19--27 |
|---|
| 2022 | Lin, Yuxin and Sun, Hui and Shaukat, Aftab and Deng, Tingxian and Abdel-Shafy, Hamdy and Che, Zhaoxuan and Zhou, Yang and Hu, Changmin and Li, Huazhao and Wu, Qipeng and Yang, Liguo and Hua, Guohua Novel Insight Into the Role of ACSL1 Gene in Milk Production Traits in Buffalo. In: Frontiers in Genetics, Volume 13 - 2022, 2022, |
|---|
| 2022 | Ma, Xiao-ya and Duan, An-qin and Lu, Xing-rong and Liang, Sha-sha and Sun, Pei-hao and Sohel, Md Mahmodul Hasan and Abdel-Shafy, Hamdy and Amin, Ahmed and Liang, Ai-xin and Deng, Ting-xian: Novel Insight into the Potential Role of Acylglycerophosphate Acyltransferases Family Members on Triacylglycerols Synthesis in Buffalo. In: International Journal of Molecular Sciences, 23, 2022, |
|---|
| 2021 | Abdel-Shafy, Hamdy: Genomic selection: towards meeting challenge of food security. In: Annals of Agricultural Science, Moshtohor, 59, 2021, 1--8 |
|---|
| 2020 | Hamdy Abdel-Shafy and Mohamed A.A. Awad and Hussein El-Regalaty and Ahmed Ismael and Salah El-Din El-Assal and Samy Abou-Bakr: A single-step genomic evaluation for milk production in Egyptian buffalo. In: Livestock Science, 234, 2020, 103977 |
|---|
| 2020 | Awad, MAA and Abou-Bakr, S and El-Regalaty, H and El-Assal, S.E-D and and Abdel-Shafy, H.: Determination of Potential Candidate Genes Associated with Milk Lactose in Egyptian Buffalo.. In: World's Veterinary Journal, 10, 2020, 35--42 |
|---|
| 2020 | X.R. Lu and A.Q. Duan and W.Q. Li and H. Abdel-Shafy and H.E. Rushdi and S.S. Liang and X.Y. Ma and X.W. Liang and T.X. Deng: Genome-wide analysis reveals genetic diversity, linkage disequilibrium, and selection for milk production traits in Chinese buffalo breeds. In: Journal of Dairy Science, 103, 2020, 4545-4556 |
|---|
| 2020 | Abdel-Shafy, Hamdy and Awad, Mohamed A. A. and El-Regalaty, Hussein and El-Assal, S. E.-D. and Abou-Bakr, Samy: Prospecting genomic regions associated with milk production traits in Egyptian buffalo. In: Journal of Dairy Research, 87, 2020, 389–396 |
|---|
| 2019 | Nermin El-Halawany and Afaf El-Werdany and Yasmin A. El-Sayed and Abd-El-Monsif A. Shawky and Ahmed F. Al-Tohamy and Hamdy Abdel-Shafy and Fathy M. Abd-El-Razek: Characterization of growth hormone gene (GH) in three Egyptian goat breeds. In: Meta Gene, 20, 2019, 100556 |
|---|
| 2019 | El-Halawany, N and Abd-El-Monsif, AS and Sherif, SM and El-Wardany, AE and Abdel-Latif, MA and Abdel-Shafy, H and Al-Tohamy, AF and El-Sayed, Y: Investigation of STAT5A, OLR1, LF and TLR4 Variants and Its Association With Milk Yield In Egyptian Buffalo, Res. In: J. Pharm. Biol. Chem. Sci, 10, 2019, 179--187 |
|---|
| 2018 | Nermin El-Halawany and Abd-El-Monsif A. Shawky and Ahmed F.M. Al-Tohamy and Magdy A. Abdel-Latif and Hamdy Abdel-Shafy and Yasser A. Ghazi and Christiane Neuhoff and Karl Schellander: Effect of complement component 5 polymorphisms on mastitis resistance in Egyptian buffalo and cattle. In: Research in Veterinary Science, 119, 2018, 45-51 |
|---|
| 2018 | Nermin El-Halawany and Omaima M. Kandil and Abd-El-Monsif A. Shawky and Ahmed F.M. Al-Tohamy and Yasmeen A. El-Sayd and Hamdy Abdel-Shafy and El-Sayed I Abou-Fandoud and Safaa N. Abdel-Azeem and Abeer H. Abd El-Rahim and Ahmed S.S. Abdoon and Jennifer J. Michal and Zhihua Jiang: Investigating the effect of GDF9, BMP15, BMP6 and BMPR1B polymorphisms on Egyptian sheep fecundity and their transcripts expression in ovarian cells. In: Small Ruminant Research, 165, 2018, 34-40 |
|---|
| 2018 | Abdel-Shafy, H and El-Halawany, NK and Shawky, AA and Al-Tohamy, AFM: Revisiting genome-wide suggestive regions for daily milk production in Egyptian buffalo using a multi-locus approach. Proceedings of the World Congress on Genetics Applied to Livestock Production. 2018. 11 |
|---|
| 2018 | Abdel-Shafy, H. and Bortfeldt, R. H. and Reissmann, M. and Brockmann, G. A.: Validating genome-wide associated signals for clinical mastitis in German Holstein cattle. In: Animal Genetics, 49, 2018, 82-85 |
|---|
| 2017 | Rushdi, Hossam El-Din and Moghaieb, Reda Elwany Abdelhaleem and Abdel-Shafy, Hamdy and Ibrahim, Mohamed Abd El-Aziz Mohamed: Association between microsatellite markers and milk production traits in Egyptian buffaloes. In: Czech Journal of Animal Science, 62, 2017, 384-391 |
|---|
| 2017 | EL-HALAWANY, NERMIN and ABD-EL-MONSIF, A SHAWKY and AL-TOHAMY, AHMED FM and HEGAZY, LAMEES and ABDEL-SHAFY, HAMDY and ABDEL-LATIF, MAGDY A and GHAZI, YASSER A and NEUHOFF, CHRISTIANE and SALILEW-WONDIM, DESSIE and SCHELLANDER, KARL: Complement component 3: characterization and association with mastitis resistance in Egyptian water buffalo and cattle. In: Journal of Genetics, 96, 2017, 1--9 |
|---|
| 2017 | El-Halawany, Nermin and Abd-El-Razek, Fathy and El-Sayed, Yasmin A and El-Werdany, Afaf and Shawky, Abd-El-Monsif and Al-Tohamy, Ahmed and Abdel-Shafy, Hamdi: Genetic Polymorphisms in Exon-3 region of Growth Hormone Gene in the Egyptian Goat Breeds. In: Egyptian Academic Journal of Biological Sciences. C, Physiology and Molecular Biology, 9, 2017, 1-8 |
|---|
| 2017 | Nermin El-Halawany and Hamdy Abdel-Shafy and Abd-El-Monsif A. Shawky and Magdy A. Abdel-Latif and Ahmed F.M. Al-Tohamy and Omaima M. {Abd El-Moneim}: Genome-wide association study for milk production in Egyptian buffalo. In: Livestock Science, 198, 2017, 10-16 |
|---|
| 2016 | Abdel-Shafy, H and Bortfeldt, RH and Rei{\ss}mann, M and Brockmann, GA: Confirmation of genome-wide associations for clinical mastitis in German Holstein cattle. In: Journal of Animal Science, 94, 2016, 115--116 |
|---|
| 2015 | Abdel-Shafy, Hamdy: Progress and challenges in genome-wide association studies in buffalo. 2nd International Conference on the Modern Approaches in Livestock's Production Systems. 2015. 145--153 |
|---|
| 2014 | Abdel-Shafy, H. and Bortfeldt, R.H. and Tetens, J. and Thaller, G.A. and Brockmann, G.A.: Performance of single markers vs. haplotypes to identify genomic loci associated with mastitis resistance in German Holstein cattle. 10th World Congress on Genetics Applied to Livestock Production. 2014. |
|---|
| 2014 | Abdel-Shafy, Hamdy and Bortfeldt, Ralf H and Reissmann, Monika and Brockmann, Gudrun A: Short communication: Validation of somatic cell score–associated loci identified in a genome-wide association study in German Holstein cattle. In: Journal of dairy science, 97, 2014, 2481--2486 |
|---|
| 2014 | Abdel-Shafy, Hamdy and Bortfeldt, Ralf H and Tetens, Jens and Brockmann, Gudrun A: Single nucleotide polymorphism and haplotype effects associated with somatic cell score in German Holstein cattle. In: Genetics Selection Evolution, 46, 2014, 35 |
|---|
| 2012 | Abdel-Shafy, H. and Bortfeldt, R. and Tetens, J. and Brockmann, G.: Genome-wide association study for somatic cell score in German Holstein cattle. 25th International conference - Genetic Days. 2012. |
|---|
| 2012 | Abdel-Shafy, H. and Brockmann, G.: Identification of chromosomal regions associated with somatic cell score in German Holstein cattle. Dairy Cattle Symposium. 2012. |
|---|
| 2011 | Abdel-Shafy, H. and Bortfeldt, R. and Brockmann, G.: Identification of SNPs and chromosomal regions in chromosome 5 associated with somatic cell score (SCS) in German Holstein. Physiology and Genomics of Mastitis. 2011. |
|---|
| 2008 | Abde-Shafy, H. and Hafez, Y.M. and El-Borady, A.M. and Ahmed, N.A.: Can Early Heat Exposure and rbST Alleviate Heat Stress in Rabbits?. The 14th Scientific Conference of Egyptian Society of Animal Production (ESAP) \& the 3rd Scientific Conference of Animal Production Research Institute (APRI). 2008. |
|---|
| 2006 | Hafez, Y.M. and El-Borady, A.M. and Ahmed, N.A. and Abdel-Shafy, H.: Productive performance and meat quality of rabbits treated with recombinant bovine somatotropin (rbST) as growth enhancer. Egyptian Journal of Rabbit Science. In: Egyptian Journal of Rabbit Science, 16, 2006, 263--275 |
|---|
